Behaviour

Pirecorder: Controlled and automated image and video recording with the raspberry pi

pirecorder is a Python package, built on the picamera and OpenCV libraries, that provides a flexible solution for the collection of consistent image and video data with the raspberry pi. It was developed to overcome the need for a complete solution to help researchers, especially those with limited coding skills, to easily set up and configure their raspberry pi to run large numbers of controlled and automated image and video recordings using optimal settings.

KineMouse Wheel

Who says you can’t reinvent the wheel?! This running wheel for head-fixed mice allows 3D reconstruction of body kinematics using a single camera and DeepLabCut (or similar) software. A lightweight, transparent polycarbonate floor and a mirror mounted on the inside allow two views to be captured simultaneously.

jsPsych

jsPsych is a JavaScript library for running behavioral experiments in a web browser. The library provides a flexible framework for building a wide range of laboratory-like experiments that can be run online.

Open Source Tools for Temporally Controlled Rodent Behavior Suitable for Electrophysiology and Optogenetic Manipulations

Understanding how the brain controls behavior requires observing and manipulating neural activity in awake behaving animals. Neuronal firing is timed at millisecond precision. Therefore, to decipher temporal coding, it is necessary to monitor and control animal behavior at the same level of temporal accuracy.

Psygo

The easiest way to get started creating online behavioural experiments! psygo is a CLI tool that streamlines the development of custom jsPsych plugins, allowing you to create custom behavioural experiments that can be run online.

Mouse VR

Harvey Lab miniaturized mouse VR rig for head-fixed virtual navigation and decision-making tasks. The VR setup is comprised of several independent assemblies: The screen assembly: a laser projector projects onto a parabolic screen surrounding the mouse.

FastTrack

FastTrack is an open-source cross-platform tracking software. Easy to install and easy to use, it can track a large variety of systems from active particles to animals, with a known or unknown number of objects.

PiDose

PiDose is an open-source tool for scientists performing drug administration experiments with mice. It allows for automated daily oral dosing of mice over long time periods (weeks to months) without the need for experimenter interaction and handling.

pyControl

pyControl is a system of open source hardware and software for controlling behavioural experiments, built around the Micropython microcontroller. pyControl makes it easy to program complex behavioural tasks using a clean, intuitive, and flexible syntax for specifying tasks as state machines.

SLEAP

SLEAP (Social LEAP Estimates Animal Poses) is a multi-animal pose tracker based on deep learning. It is the successor of LEAP (Pereira et al., Nature Methods, 2019) and was designed to deal with the problem of tracking body landmarks of multiple freely interacting animals.