Microscopes software

Micro-Manager is an ImageJ plugin dedicated to the control of microscopes. Their intent is to have a “one fits all” software for the control of microscopes, stages, filters and cameras. A comprehensive list of supported devives can be found on devices section of the project webpage.

The Open Microscopy Environment is a collaborative project between several labs. They are developing file formats and software standards for light microscopy. Within the project they have BIO-formats, a Java library for reading and writing data.