Fluorescence

pyPhotometry is system of open source, Python based, hardware and software for neuroscience fiber photometry data acquisition, consisting of an acquisition board and graphical user interface. pyPhotometry supports data aquisition from two analog and two digital inputs, and control of two LEDs via built in LED drivers with an adjustable 0-100mA output.

cellfinder is software from the Margrie Lab at the Sainsbury Wellcome Centre for automated 3D cell detection and registration of whole-brain images (e.g. serial two-photon or lightsheet imaging). It’s a work in progress, but cellfinder can: