Software

Nipoppy is a lightweight framework for standardized organization and processing of neuroimaging-clinical datasets. Its goal is to help users adopt the FAIR principles and improve the reproducibility of studies. The framework includes three components:

When meta-research (research on research) makes an observation or points out a problem (such as a flaw in methodology), the project should be repeated later to determine whether the problem remains.

PREreview’s mission is to make scholarly peer review more equitable, open, and collaborative. We create open-source tools that enable experts to provide constructive feedback on preprints and receive recognition for their contributions.

Free silhouette images of animals, plants, and other life forms, available for reuse under Creative Commons licenses. Project Author(s) T. Michael Keesey Project Links https://www.phylopic.org/ This post was automatically generated by T.

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning. Project Author(s) Harry Carey, Michael Pegios; Lewis Martin; Chris Saleeba; Anita J.

This repository contains the code of the Neuronal Spike Shapes (NSS), a simple approach for analyzing the electrophysiological profiles of cells based on their Action Potential (AP) waveforms. The NSS method explores the heterogeneity of cell types and states by summarizing the AP waveform into a triangular representation complemented by a set of derived electrophysiological (EP) features.

NeuroAnsible is a software installation system to take an Ubuntu LTS desktop and turn it into a Neuroimaging workstation. NeuroAnsible installs software in a module system similar to those available on large HPCs, aiming to be minimally invasive to the underlying system.

Zapit is a general purpose package for coordinating galvo-based optostimulation in head-fixed mice. It is a software and hardware solution with an emphasis on flexibility and ease of use. The software will run on a variety of hardware designs and experimental paradigms.

Movement is a a Python toolbox for analysing body movements across space and time, to aid the study of animal behaviour in neuroscience. Pose estimation tools, such as DeepLabCut and SLEAP are now commonplace when processing video data of animal behaviour.

BCIWiki is a collection of links and resources related to computers that interface with the nervous system. The long-term goals for this project are to make it simple for anyone to understand the capabilities and limitations of Brain-Computer Interface (BCI) technologies, and to make informed hypotheses about their potential uses.