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A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning. Project Author(s) Harry Carey, Michael Pegios; Lewis Martin; Chris Saleeba; Anita J.

World Wide Series Seminar Cells and microorganisms are motile, yet the stationary nature of conventional microscopes impedes comprehensive, long-term behavioral and biomechanical analysis. The limitations are twofold: a narrow focus permits high-resolution imaging but sacrifices the broader context of organism behavior, while a wider focus compromises microscopic detail.

BORIS is an easy-to-use event logging software for video/audio coding and live observations. Project Author(s) Olivier Friard; Marco Gamba Project Links www.boris.unito.it This post was automatically generated by anonymous

We present “Twinkle”: a microscope for Two-photon Imaging in Neuroscience, and Kit for Learning and Education. It is a fully open, high-performance and cost-effective research and teaching microscope without any custom parts beyond what can be fabricated in a university machine shop.

This repository contains the code of the Neuronal Spike Shapes (NSS), a simple approach for analyzing the electrophysiological profiles of cells based on their Action Potential (AP) waveforms. The NSS method explores the heterogeneity of cell types and states by summarizing the AP waveform into a triangular representation complemented by a set of derived electrophysiological (EP) features.

NeuroAnsible is a software installation system to take an Ubuntu LTS desktop and turn it into a Neuroimaging workstation. NeuroAnsible installs software in a module system similar to those available on large HPCs, aiming to be minimally invasive to the underlying system.

Zapit is a general purpose package for coordinating galvo-based optostimulation in head-fixed mice. It is a software and hardware solution with an emphasis on flexibility and ease of use. The software will run on a variety of hardware designs and experimental paradigms.

Movement is a a Python toolbox for analysing body movements across space and time, to aid the study of animal behaviour in neuroscience. Pose estimation tools, such as DeepLabCut and SLEAP are now commonplace when processing video data of animal behaviour.

BCIWiki is a collection of links and resources related to computers that interface with the nervous system. The long-term goals for this project are to make it simple for anyone to understand the capabilities and limitations of Brain-Computer Interface (BCI) technologies, and to make informed hypotheses about their potential uses.

Bpod is an open-source platform for real-time behavioral measurement in multi-trial experiments. With control software in MATLAB and device firmware in Arduino, it is designed to be customized with the software talent in a typical academic Neuroscience lab.