Human Electrophysiology

Recent advances in high-density neural probes, such as Neuropixels, have revolutionized electrophysiology. However, they produce large, complex datasets that require extensive quality control. This is typically done through manual curation, which is time-consuming, subjective, and lacks standardization.

iElectrodes is an open-source Matlab toolbox to localize intracranial electrodes from MRI and CT images. Atlas and brain surfaces can be easily loaded for anatomical labeling. The toolbox is capable of working with ECoG (subdural grids and strips) and SEEG (depth) electrodes.

Reading directions vary across writing systems. Through long-term experience readers adjust their visual systems to the dominant reading direction in their writing systems. However, little is known about the neural correlates underlying these adjustments because different writing systems do not just differ in reading direction, but also regarding visual and linguistic properties.

YASA (Yet Another Spindle Algorithm) is a command-line sleep analysis toolbox in Python. The main functions of YASA are: Automatic sleep staging of polysomnography data (see preprint article). Event detection: sleep spindles, slow-waves and rapid eye movements, on single or multi-channel EEG data.

Extracellular microelectrodes frequently record neural activity from more than one neuron in the vicinity of the electrode. The process of labeling each recorded spike waveform with the identity of its source neuron is called spike sorting and is often approached from an abstracted statistical perspective.

MNE-Python is an open-source Python module for neuroscience data analysis. It implements many neuroscience-specific algorithms and statistical tools; has rich visualization capabilities that are both interactive and fully scriptable (for reproducibility); and integrates easily with general-purpose libraries like SciPy, Scikit-learn, and TensorFlow.

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis.

EmotiBit is a wearable sensor to capture high-quality emotional, physiological, and movement data from just about anywhere on the body. Project Author(s) Sean Montgomery Project Links https://www.emotibit.com/ Project Video https://www.youtube.com/watch?v=jbcL2jzyWj4&ab_channel=EmotiBit

Neurostars is an open source question and answer site that serves the INCF network and the global neuroscience community as a forum for knowledge exchange between neuroscience researchers at all levels of expertise, software developers, and infrastructure providers.

The INCF portal is the guide to the INCF activities and its community resources. INCF advances data reuse and reproducibility in brain research by coordinating the development of Open, FAIR, and Citable tools and resources for neuroscience