Tutorials & learning portals


WholeBrain is a software to create anatomical maps. With a code base in C/C++ with wrappers to R and JavaScript/WASM. The purpose of WholeBrain is to provide a user-friendly and efficient way for scientist with minimal knowledge of computers to create anatomical maps and integrate this information with behavioral and physiological data for sharing on the web.

ReproNim: A Center for Reproducible Neuroimaging Computation

ReproNim’s goal is to improve the reproducibility of neuroimaging science and extend the value of our national investment in neuroimaging research, while making the process easier and more efficient for investigators.


DeepLabCut™ is an efficient method for 3D markerless pose estimation based on transfer learning with deep neural networks that achieves excellent results (i.e. you can match human labeling accuracy) with minimal training data (typically 50-200 frames).

Addgene's AAV Data Hub

AAV are versatile tools used by neuroscientists for expression and manipulation of neurons. Many scientists have benefited from the high-quality, ready-to-use AAV prep service from Addgene, a nonprofit plasmid repository. However, it can be challenging to determine which AAV tool and techniques are best to use for an experiment.


BossDB is a volumetric database that lives in the AWS cloud. Hundreds of terabytes of electron microscopy, light microscopy, and x-ray tomography data are available for free download and study.