Data Analysis


Napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing large multi-dimensional images. It’s built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy).


CLIJ2 is a GPU-accelerated image processing library for ImageJ/Fiji, Icy, Matlab and Java based on OpenCL. It comes with hundreds of operations for filtering, binarizing, labeling, measuring in images, projections, transformations and mathematical operations for images.


morphologica is a header-only C++ library which provides simulation support facilities for simulations of dynamical systems. It helps with: Configuration: morphologica allows you to easily set up a simulation parameter configuration system, using the JSON reading and writing abilities of morph::Config.


NetPyNE (Networks using Python and NEURON) is a Python package to facilitate the development, simulation, parallelization, analysis, and optimization of biophysical neuronal networks using the NEURON simulator. For more details, installation instructions, documentation, tutorials, forums, videos and more, please visit: www.


Greedy is a tool for fast medical image registration. It is a fast CPU-based deformable image registration tool that can be used in applications where many images have to be registered in parallel.


ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis.

TGAC Browser

The TGAC Browser is a Genomic Browser with novel rendering and annotation capabilities designed to overcome some shortcomings in available approaches. It was developed to visualize genome annotations from Ensembl Database Schema.


BrainSMASH is a Python-based framework for quantifying the significance of a brain map’s spatial topography in studies of large-scale brain organization. BrainSMASH was designed to generate synthetic brain maps with spatial autocorrelation (SA) matched to the SA of a target brain map.


FastTrack is an open-source cross-platform tracking software. Easy to install and easy to use, it can track a large variety of systems from active particles to animals, with a known or unknown number of objects.

INCF Portal

The INCF portal is the guide to the INCF activities and its community resources. INCF advances data reuse and reproducibility in brain research by coordinating the development of Open, FAIR, and Citable tools and resources for neuroscience